Dinneny's lab @ Carnegie Institution for Science
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A Spatio-Temporal Understanding of Growth Regulation during the Salt Stress Response in ArabidopsisY. Geng, R. Wu, C. W. Wee, F. Xie, X. Wei, P. M. Y. Chan, C. Tham, L. Duan, J. R. DinnenyThe Plant Cell, 2013 View paper
Other tools for the analysis of single-root:
RootTip Trace is a plugin for ImageJ (or Fiji) for the semi-automated tracking of single roots in time-series images.
Source: Dinneny's lab website