Hanchuan Peng lab
|Measured variables||3D-reconstruction, surface|
|Operating system||mac, windows, linux|
Extensible visualization and analysis for multidimensional images using Vaa3DHanchuan Peng, Alessandro Bria, Zhi Zhou, Giulio Iannello, Fuhui LongNature Protocols, 2014 View paper
Other tools for the analysis of general:
Vaa3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron tracing, brain registration, annotation, quantitative measurement and statistics, etc) and data management. This makes Vaa3D suitable for various bioimage informatics applications, and a nice platform to develop new 3D image analysis algorithms for high-throughput processing. In short, Vaa3D streamlines the workflow of visualization-assisted analysis.
Source: Vaa3D webpage