MorphoDynamX
Richard Smith and his team (JIC in Norwich)
Overview
| Model category | ODE |
|---|---|
| Plant part | Cell, Tissue |
| Scale | Cells |
| Licence | Open-source |
| Operating system | Linux, Windows |
| Programming language | C++ |
| Format of model inputs and outputs | |
| Species studied | Plants |
| Execution environment | MorphoGraphX |
| Modelling environment |
Scientific article
A computational framework for cortical microtubule dynamics in realistically shaped plant cellsBandan Chakrabortty, Ikram Blilou, Ben Scheres, Bela M. MulderPLOS Computational Biology, 2018 View paper
Model description
MorphoDynamX is based on a data structure called Cell Complexes that are ideal for modeling subdividing geometry in 2 and 3 dimensions. MorphoDynamX integrates image processing with simulation modeling, and allows models to run directly on templates extracted from imaging data.
Some case studies
For more case studies about MorphoDynamX, follow this link to the publication page ==> https://morphographx.org/publications/