SeedGerm
Josh Colmer, Ji Zhou
Overview
| Measured variables | germination, establishment‐related traits |
|---|---|
| Operating system | Windows |
| Licence | Open source |
| Automation level | Automated |
| Plant requirements | tomato, pepper, Brassica, barley, maize |
| Export formats | csv (trait analysis), jpg (processed images) |
| Other information |
Scientific article(s)
SeedGerm: a cost‐effective phenotyping platform for automated seed imaging and machine‐learning based phenotypic analysis of crop seed germinationJoshua Colmer, Carmel M. O'Neill, Rachel Wells, Aaron Bostrom, Daniel Reynolds, Danny Websdale, Gagan Shiralagi, Wei Lu, Qiaojun Lou, Thomas Le Cornu, Joshua Ball, Jim Renema, Gema Flores Andaluz, Rene Benjamins, Steven Penfield, Ji ZhouNew Phytologist, 2020 View paper
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Description
SeedGerm system combines cost‐effective hardware and open‐source software for seed germination experiments, automated seed imaging, and machine‐learning based phenotypic analysis. The software can process multiple image series simultaneously and produce reliable analysis of germination‐ and establishment‐related traits.