Fijiyama

Romain Fernandez

Overview

Measured variables	2D - 5D Registration
Operating system	Linux
Licence	Open source
Automation level	Automated
Plant requirements	Any
Export formats	TIFF
Other information

Scientific article(s)

Fijiyama: a registration tool for 3D multimodal time-lapse imaging
Romain Fernandez, Cédric Moisy
Bioinformatics, 2020 View paper

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Description

The plugin Fijiyama (Yet Another Matching and Alignment tool for Fiji) is a generic tool for registration and alignment of 3D image series collected from various imaging modalities (MRI, X-rays, Microscopy, Photography, …). This work was supported by the French Ministry of Agriculture, France AgriMer, CNIV and IFV, within VITIMAGE and VITIMAGE-2024 projects (program Plan National Dépérissement du Vignoble).