TRiP
Departement of Biological Sciences @ Dartmouth College
Overview
| Measured variables | movement |
|---|---|
| Operating system | mac, windows, linux, matlab |
| Licence | open-source, freeware |
| Automation level | automated |
| Plant requirements | Dicot |
| Export formats | txt, png |
| Other information | - |
Scientific article(s)
TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimationKathleen Greenham, Ping Lou, Sara E Remsen, Hany Farid, C Robertson McClungPlant Methods, 2015 View paper
Description
TRiP is a matlab-based program for estimating circadian period from whole plant image data. TRiP includes a grid-based cropping function that takes each image stack as input and crops the images using grid coordinates to output image stacks for each plant. A motion estimation algorithm is applied to the image stacks and outputs a motion vector for each image over time. The motion vectors are used to estimate circadian period using a single frequency FFT-NLLS method.
Source: TRiP GitHub page